研究者業績

北村 祐貴

Kitamura Yuki

基本情報

所属
自治医科大学 医学部 環境予防医学講座 講師
学位
博士(医学)(三重大学)

研究者番号
80802553
J-GLOBAL ID
201801014347038210
researchmap会員ID
B000331455

経歴

 3

委員歴

 2

論文

 18
  • Ryoya Takizawa, Akihiko Ikegami, Cai Zong, Syun Nemoto, Yuki Kitamura, Nathan Mise, Gaku Ichihara, Sahoko Ichihara
    Fundamental Toxicological Sciences 11(3) 109-121 2024年  
  • Koichi Kato, Tomoki Nakayoshi, Yuki Kitamura, Eiji Kurimoto, Akifumi Oda, Yoshinobu Ishikawa
    Biochemistry 62(11) 1679-1688 2023年6月6日  
    Crystallin aggregation in the eye lens is involved in the pathogenesis of cataracts. The aggregation is considered to be promoted by non-enzymatic post-translational modifications, such as the deamidation and stereoinversion of amino acid residues. Although in a previous study, the deamidated asparagine residues were detected in γS-crystallin in vivo, it is unclear which deamidated residues have the most impact on the aggregation under physiological conditions. In this study, we investigated the deamidation impacts of all Asn residues in γS-crystallin for the structural and aggregation properties utilizing deamidation mimetic mutants (N14D, N37D, N53D, N76D, and N143D). The structural impacts were investigated using circular dichroism analysis and molecular dynamics simulations, and the aggregation properties were analyzed by gel filtration chromatography and spectrophotometric methods. No significant structural impacts of all mutations were detected. However, the N37D mutation decreased thermal stability and changed some intermolecular hydrogen-bond formations. Aggregation analysis indicated that the superiority of the aggregation rate in each mutant varied with temperature. Deamidation at any Asn residues promoted γS-crystallin aggregation, and the deamidation at Asn37, Asn53, and Asn76 were suggested to be the most impactful in the formation of insoluble aggregations.
  • Yuki Kitamura, Shinji Oikawa, Jie Chang, Yurie Mori, Gaku Ichihara, Sahoko Ichihara
    Antioxidants 12(4) 844-844 2023年3月31日  査読有り筆頭著者
    Based on the known role of oxidative stress in the pathogenesis and progression of metabolic syndrome, we used two-dimensional gel electrophoresis with immunochemical detection of protein carbonyls (2D-Oxyblot) to characterize the carbonylated proteins induced by oxidative stress in spontaneously hypertensive rats/NDmcr-cp (CP), an animal model of metabolic syndrome. We also profiled the proteins that showed change of expression levels in their epididymal adipose tissue at the pre-symptomatic (6-week-old) and the symptomatic (25-week-old) stages of the metabolic syndrome. Two-dimensional fluorescence difference gel electrophoresis (2D-DIGE) combined with matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry (MALDI-TOF/TOF MS) was used to analyze proteins extracted from the epididymal adipose tissue. The up-regulated proteins identified at the pre-symptomatic stage were mainly associated with ATP production and redox reaction, while the down-regulated proteins found at the symptomatic stage were involved in antioxidant activity and the tricarboxylic acid (TCA) cycle. Further analysis using the 2D-Oxyblot showed significantly high carbonylation levels of gelsolin and glycerol-3-phosphate dehydrogenase [NAD+] at the symptomatic stage. These results suggest that reduced antioxidant capacity underlies the increased oxidative stress state in the metabolic syndrome. The identified carbonylated proteins, including gelsolin, are potential targets that may act as key regulators in the progression of the metabolic syndrome.
  • Mizuho Suzuki, Kyosuke Takeshita, Yuki Kitamura, Marie Kuribayashi, Zhenlie Huang, Gaku Ichihara, Shinji Oikawa, Sahoko Ichihara
    BIOMEDICINES 11(2) 2023年2月  査読有り
    Diabetes mellitus (DM) is a pro-thrombotic state that can potentially cause serious cardiovascular complications. Platelet hyperactivation plays an important role in these pathological processes, however there is little or no information on the effect of hyperglycemia on platelet proteins. The aim of this study was to identify the molecular targets associated with platelet reactivity under hyperglycemia. Towards this goal, we examined the effects of the exposure of platelets to 1 and 2 h glucose (300 mg/dL) and control (vehicle and osmolality control using mannitol) on platelet proteins (n = 4 samples per group) using two-dimensional fluorescence difference gel electrophoresis (2D-DIGE) combined with MALDI-TOF/TOF tandem mass spectrometry. Two-hour exposure to glucose significantly up-regulated the expression of ATP synthase subunit beta, filamin-A, and L-lactate dehydrogenase A chain in platelets. Pro-Q Diamond staining confirmed the effect of 2 h glucose on vinculin, heat shock protein HSP 90-alpha, filamin-A, and fructose-bisphosphate aldolase A (platelet phosphorylated proteins). The identified proteins are involved in various cellular processes and functions and possibly in platelet reactivity under hyperglycemic conditions.
  • Yuki Kitamura, Mayuko Sakanashi, Azuki Ozawa, Yuri Saeki, Ayano Nakamura, Yuiho Hara, Ken-ichi Saeki, Sakae Arimoto-Kobayashi
    Biochemical and Biophysical Research Communications 555 154-159 2021年5月  査読有り筆頭著者責任著者
  • Yuki Kitamura, Nathan Mise, Yurie Mori, Yuka Suzuki, Tomoki Ohashi, Saeko Tada-Oikawa, Masaki Tokisu, Cai Zong, Shinji Oikawa, Sahoko Ichihara
    Scientific Reports 10(1) 2020年12月  査読有り筆頭著者
    <title>Abstract</title> Smoking increases the risk of cardiovascular diseases. The present study was designed to determine the effects of 2-month exposure to cigarette smoke (CS) on proteins in the left ventricles of spontaneously hypertensive rats (SHR) and to identify the molecular targets associated with the pathogenesis/progression of CS-induced cardiac hypertrophy. SHR and Wistar Kyoto rats (WKY) were exposed to CS at low (2 puffs/min for 40 min) or high dose (2 puffs/min for 120 min), 5 days a week for 2 months. Using the two-dimensional fluorescence difference gel electrophoresis combined with MALDI-TOF/TOF tandem mass spectrometry, we compared differences in the expression levels of proteins in the whole left ventricles induced by long-term smoking. High-dose CS mainly caused cardiac hypertrophy in SHR, but not WKY, but no change in blood pressure. Proteomic analysis identified 30 protein spots with significant alterations, with 14 up-regulated and 16 down-regulated proteins in the left ventricles of CS-exposed SHR, compared with control SHR. Among these proteins, two members of the heat shock proteins (HSP70 and HSP20) showed significant up-regulation in the left ventricles of CS high-dose SHR, and the results were confirmed by western blot analysis. Our findings suggested that HSPs play an important role in regulation of CS-induced cardiac hypertrophy.
  • Hideki Mizutani, Chiaki Shiga, Masanori Imai, Kenji Ikemura, Yuki Kitamura, Kinya Ohta, Daisuke Miyazawa, Mayuko Sakanashi, Tomoko Tahira, Tohru Maeda, Yusuke Hiraku, Shosuke Kawanishi
    Anticancer research 40(10) 5399-5404 2020年10月  査読有り
    BACKGROUND/AIM: The aim of the present study was to investigate whether idarubicin (IDR) induces oxidative DNA damage in the presence of copper (II). MATERIALS AND METHODS: DNA damage was evaluated by pBR322 plasmid DNA cleavage. The formation of oxidative stress markers [O2•- and 8-hydroxy-2'-deoxyguanosine (8-OHdG)] was analysed. RESULTS: IDR induced DNA damage and O2•- and 8-OHdG generation in the presence of copper (II). CONCLUSION: IDR induced oxidative DNA damage in the presence of copper (II). Since it has been reported that the concentration of copper in the serum of cancer patients is higher than that in healthy groups, IDR-induced oxidative DNA damage in the presence of copper (II) may play an important role in anticancer therapeutic strategies.
  • Yuki Kitamura, Ken-ichi Saeki
    Drug Discoveries &amp; Therapeutics 14(4) 204-208 2020年8月31日  査読有り筆頭著者
  • Yuki Kitamura, Takayoshi Suzuki, Arihiro Kohara, Ken-ichi Saeki
    Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 821 111709-111709 2020年5月  査読有り筆頭著者
  • Yurie Mori, Shinji Oikawa, Shota Kurimoto, Yuki Kitamura, Saeko Tada-Oikawa, Hatasu Kobayashi, Tetsumori Yamashima, Mariko Murata
    Journal of Clinical Biochemistry and Nutrition 2020年4月  査読有り
  • Hideki Mizutani, Yuka Hayashi, Miyabi Hashimoto, Masanori Imai, Yoshimi Ichimaru, Yuki Kitamura, Kenji Ikemura, Daisuke Miyazawa, Kinya Ohta, Yoshiaki Ikeda, Tohru Maeda, Masae Yoshikawa, Yusuke Hiraku, Shosuke Kawanishi
    Anticancer Research 39(7) 3443-3451 2019年7月  査読有り
  • Daichi Nagashima, Lingyi Zhang, Yuki Kitamura, Sahoko Ichihara, Eri Watanabe, Cai Zong, Yuko Yamano, Toshihiro Sakurai, Shinji Oikawa, Gaku Ichihara
    Archives of Toxicology 93(7) 1993-2006 2019年7月1日  査読有り
  • 奥村 典子, 川波 恭子, 谷口 真衣子, 苫米地 彩花, 竹内 堂朗, 北村 祐貴, 宇野 文二
    YAKUGAKU ZASSHI 139(9) 1195-1200 2019年  査読有り
  • Yuki Kitamura, Midori Kojima, Toshihito Kurosawa, Ryogen Sasaki, Sahoko Ichihara, Yusuke Hiraku, Hidekazu Tomimoto, Mariko Murata, Shinji Oikawa
    Neuroscience 392 121-128 2018年11月  査読有り筆頭著者
  • Sahoko Ichihara, Yuka Suzuki, Jie Chang, Kentaro Kuzuya, Chisa Inoue, Yuki Kitamura, Shinji Oikawa
    SCIENTIFIC REPORTS 7(1) 9243 2017年8月  査読有り
    Inflammation enhanced by accumulation of reactive oxygen species plays an essential role in the progression of cardiovascular diseases. Using the 2D-oxyblot analysis and 2D-difference image gel electrophoresis (2D-DIGE), we compared the levels of ROS-induced carbonyl modification of myocardial proteins in the whole left ventricles between 6-week-old hamsters with dilated (TO-2) and hypertrophic cardiomyopathy (Bio14.6) and control hamsters (F1B). Then, 2D electrophoresis combined with MALDI-TOF/TOF tandem mass spectrometry detected 18 proteins with increased carbonyl level in cardiomyopathy hamsters compared with control hamster. Carbonyl modification of proteins related to ATP synthesis, including citric acid cycle and electron transport system, was observed in the hearts of hamsters with both types of cardiomyopathy. Further analysis indicated that left ventricular carbonyl production correlated negatively with succinyl-CoA:3-ketoacid-coenzyme A transferase 1 activity (r(2) = 0.60, P = 0.0007) and ATP concentration (r(2) = 0.29, P = 0.037), suggesting that protein carbonylation has negative effects on the levels of these biomolecules. Furthermore, carbonyl production significantly correlated with plasma Troponin T level (r(2) = 0.33, P = 0.026). Reduction of energy metabolism by oxidative damage may contribute to the development of left ventricular impairment in cardiomyopathy.
  • Yuki Kitamura, Ryoko Usami, Sahoko Ichihara, Hirotaka Kida, Masayuki Satoh, Hidekazu Tomimoto, Mariko Murata, Shinji Oikawa
    NEUROLOGICAL RESEARCH 39(3) 231-238 2017年  査読有り筆頭著者
    Objectives: Alzheimer's disease (AD) is the most common cause of dementia in elderly persons. Since the pathology of AD develops slowly from a preclinical or early phase into a fully expressed clinical syndrome, at the time of diagnosis the disease has been progressing for many years. To facilitate the early diagnosis of AD, we performed protein profiling of blood in patients with mild AD as defined by the Functional Assessment Staging (FAST) scale. Methods: Plasma samples from mild AD patients and healthy controls were analyzed using two-dimensional differential gel electrophoresis (2D-DIGE) combined with matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry (MALDI-TOF/TOF/MS) followed by peptide mass fingerprinting. Results: Three downregulated proteins were identified: apolipoprotein A-1, alpha-2-HS-glycoprotein, and afamin. Two proteins, including apolipoprotein A-4 and fibrinogen gamma chain, were upregulated in mild AD patients. Discussion: Our results suggest that altered expression levels of these proteins in plasma may yield candidate biomarkers for the early diagnosis of AD.
  • Shinji Oikawa, Hatasu Kobayashi, Yuki Kitamura, Hong Zhu, Kumi Obata, Yoshio Minabe, Maryia Dazortsava, Kyoko Ohashi, Saeko Tada-Oikawa, Hitoshi Takahashi, Kenichiro Yata, Mariko Murata, Tetsumori Yamashima
    FREE RADICAL RESEARCH 48(6) 694-705 2014年6月  査読有り
    In Parkinson's disease (PD), oxidative stresses cause cell death of dopaminergic neurons of the substantia nigra (SN), but its molecular mechanism still remains unclarified. Our previous study of proteomic analysis in the monkey CA1 hippocampus after ischemia-reperfusion revealed reactive oxygen species (ROS)-induced carbonyl modification of a molecular chaperone, heat shock 70-kDa protein 1 (Hsp70.1), especially in its key site, Arg469. Here, to clarify the mechanism of neurodegeneration in PD, the SN tissue of the same monkey experimental paradigm was studied for identifying and characterizing carbonylated proteins by the two-dimensional gel electrophoresis with immunochemical detection of protein carbonyls (2D Oxyblot). We found carbonyl modification not only of Hsp70.1 but also of mitochondrial aconitase, dihydropyrimidinase-related protein 2, T-complex protein 1 subunit alpha, dihydrolipoyl dehydrogenase, fructose-bisphosphate aldolase C, glutamate dehydrogenase 1, and aspartate aminotransferase. Intriguingly, in the SN also, the carbonylation site of Hsp70.1 was identified to be Arg469. Since Hsp70.1 is recently known to stabilize the lysosomal membrane, its oxidative injury conceivably plays an important role in the ROS-mediated neuronal cell death by inducing lysosomal destabilization. Implications of each carbonylated proteins for the dopaminergic neuronal death were discussed, in comparison with the CA1 neuronal death.
  • 北村 祐貴, 山嶋 哲盛, 村田 真理子, 及川 伸二
    日本プロテオーム学会大会要旨集 2014 86-86 2014年  

MISC

 6
  • 北村祐貴
    Precision Medicine 4(14) 1338-1341 2021年12月  
  • D. Nagashima, L. Zhang, Y. Kitamura, S. Ichihara, Y. Wakayama, K. Morita, H. Katano, M. Sakai, E. Watanabe, T. Sakurai, S. Oikawa, G. Ichihara
    SOT 56th Annual Meeting and ToxExpo 2017年3月  
  • 長嶋 大地, 若山 優里奈, 北村 祐貴, 及川 伸二, 市原 佐保子, 渡邊 英里, 張 霊逸, 櫻井 敏博, 市原 学
    産業衛生学雑誌 59(1) 46-46 2017年1月  
  • 長嶋 大地, 若山 優里奈, 北村 祐貴, 及川 伸二, 市原 佐保子, 渡邊 英里, 張 霊逸, 櫻井 敏博, 市原 学
    日本毒性学会学術年会 43 O-47 2016年6月  
    【目的】分子内に電荷の偏りを持つ分子は親電子性物質と称され、生体において神経系や生殖系に毒性を有することが知られている。以前、親電子性物質1-ブロモプロパンが持つ神経毒性の分子機構を解明するためにF344ラットを用いて吸入曝露実験を行い、1週間または4週間曝露した同ラットの海馬を用いてプロテオーム解析を行った。この結果、19種のタンパク質が同定され、酸化ストレス、ATP産生の減少、神経伝達物質の機能障害等によって海馬に影響が出ることが明らかとなった。一方、親電子性物質は環境中にも多く存在し、その一つにアクリルアミドがある。アクリルアミドは繊維加工や接着剤の加工剤等に使用されるが、食品中にも多く存在する。本研究は、アクリルアミド投与ラットを用い、海馬プロテオミクスによる網羅的解析を行うことで、親電子性物質の海馬における神経毒性のメカニズムを解明することを目的とする。&lt;br&gt;【方法】9-10週齢のWisterラットにアクリルアミドを0、0.2、2.0、20.0 mg/kg経口投与を5週間、また0、2.0、20.0 mg/kg経口投与を1週間行った。両サンプルの海馬からタンパクを抽出し2D-DIGE(蛍光標識二次元ディファレンシャルゲル電気泳動)を行い、CBB染色で確認されたスポットをMALDI-TOF/TOF/MSにより同定した。&lt;br&gt;【結果・考察】2D-DIGEの結果、有意な発現差が見られたタンパク質が1週間曝露では2個、5週間曝露では33個あり、その中から1週間曝露では2個、5週間曝露では14個のタンパク質を同定した。同定したタンパク質のうち4個は20.0 mg/kg曝露において発現が増え、残りは発現が減った。その中で、エネルギー産生系に関する酵素に有意な変化が見られた為、今後、これらのタンパク質の定量評価を行うと共に、ATP産生に関するミトコンドリア機能について検討する予定である。
  • 長嶋大地, 若山優里奈, 北村祐貴, 及川伸二, 市原佐保子, 渡邊英里, ZHANG Lingyi, 櫻井敏博, 市原学
    Journal of Toxicological Sciences 41(Supplement) S206 2016年6月  

共同研究・競争的資金等の研究課題

 3